PyMOL Command Reference. This is the list of all PyMOL commands which can be used in the PyMOL command line and in PML scripts. The command descriptions found in this file can also be printed to the PyMOL text buffer with the help command. Example: The first would be for PyMOL subscribers or those who have FreeMOL with their PyMOL. The second uses PyMOL's native "sculpting". This should make the unreasonable reasonable, but of course has not been validated. Use at your own risk. (0) Start each by selecting the atoms in which you're interested, so that they're in the mouse selection, (sele). PyMOL can deduce bonds from the PDB structure file, even if the CONECT records are missing. In fact, PyMOL guesses bonding connectivity based on proximity, based on the empirical observation that two atoms of a given radius will not be generally closer than a certain distance unless they are bonded. Displaying double bonds PYMOL API. cmd. show (string representation = "", string selection = "") EXAMPLES Example # show the backbone using lines. show lines,(name ca or name c or name n) Example # show the ribbon representation for all objects show ribbon. Example # show all hetero atoms as spheres show spheres, het. Example Unofficial Windows Binaries for Python Extension Packages. by Christoph Gohlke, Laboratory for Fluorescence Dynamics, University of California, Irvine.. Updated on 5 October 2020 at 20:29 UTC. This page provides 32- and 64-bit Windows binaries of many scientific open-source extension packages for the official CPython distribution of the Python programming language.
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